Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KICH | rs73016735 | chr6:148476486 | G/A | 1.31E-6 | 63 | 67.47 | 37.68 | 20.75 | KM Plot |
| KICH | rs73016739 | chr6:148477908 | G/A | 1.31E-6 | 63 | 67.47 | 37.68 | 20.75 | KM Plot |
| KICH | rs73016743 | chr6:148478594 | G/A | 1.31E-6 | 63 | 67.47 | 37.68 | 20.75 | KM Plot |
| KICH | rs7305330 | chr12:6849879 | A/G | 1.11E-6 | 62 | 64.67 | 64.83 | 16.9 | KM Plot |
| KICH | rs73184440 | chr13:51115032 | C/A | 4.6E-7 | 63 | 63.23 | 75.97 | 16.9 | KM Plot |
| KICH | rs73217392 | chr3:134152572 | T/G | 1.35E-13 | 63 | 65.47 | 34.63 | 10.83 | KM Plot |
| KICH | rs73269134 | chr8:95810402 | A/G | 8.3E-5 | 63 | 67.47 | 17.32 | 77.8 | KM Plot |
| KICH | rs73864685 | chr3:136786069 | T/C | 7.03E-14 | 64 | 63.63 | 68.8 | 10.83 | KM Plot |
| KICH | rs73936025 | chr2:53488079 | C/T | 1.47E-13 | 63 | 65.47 | 27.78 | 10.83 | KM Plot |
| KICH | rs74156428 | chr10:61944715 | C/T | 9.73E-7 | 62 | 64.03 | 66.1 | 16.9 | KM Plot |
| KICH | rs74156431 | chr10:61952950 | A/T | 7.62E-7 | 63 | 64.83 | 66.1 | 16.9 | KM Plot |
| KICH | rs74156432 | chr10:61953034 | C/A | 7.62E-7 | 63 | 64.83 | 66.1 | 16.9 | KM Plot |
| KICH | rs74158919 | chr10:64229144 | A/T | 7.12E-14 | 63 | 64.83 | 5.72 | 70.38 | KM Plot |
| KICH | rs7420107 | chr2:13932208 | C/T | 7.07E-7 | 63 | 62.43 | 89.13 | 16.9 | KM Plot |
| KICH | rs74705649 | chr2:137094095 | T/G | 8.84E-7 | 64 | 65.47 | 64.87 | 20.75 | KM Plot |